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Modelling Workshop ODE Modelling
in Systems Biology
FRIAS Junior Researcher Conference Uni Freiburg, Germany Sep
19th – Sep 22th, 2017 |
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·
Dr.
Andreas Raue, Merrimack Pharmaceutical, Boston, USA
·
Dr.
Jan Hasenauer, Group Leader Data-driven Computational
Modeling, Helmholtz-Center, Munich
·
Prof.
Jörg Stelling, Head of
Computational Systems Biology Group, ETH Zürich, Switzerland
·
Dr.
Alejandro Villaverde, Bioprocess Engineering Group,
Vigo, Spain.
Workshop summary as Flyer (pdf).
The focus
of the workshop is
(1) methodology for establishing ODE
models, especially recent developments in optimization,
parameter estimation and uncertainty
quantification
(2) discussing and solving application show cases and issues
Focus (1) covers
the following aspects:
·
Parameter
estimation
·
Network
reconstruction/model discrimination
·
L1
penalization
·
Uncertainty
analysis (parameters and predictions)
·
Concepts
of identifiability and observability analyses
·
Optimization
issues
·
Numerical
aspects
·
Appropriate
handling of replicates, detection limits and saturation
·
Error
models
·
Benchmarking
and performance improvement
·
Overcoming
of limitations and bottlenecks
Focus (2):
For discussing and illustrating implementation issues, we request problems and questions from the workshop participants as
they occur in applications (guidelines and an example
are provided here). They are called “application issues” in the
following.
These problems are presented at the workshop, discussed by the audience with
the ultimate goal to suggest and demonstrate a solution using one of the
modelling toolboxes applied in Systems Biology (e.g. D2D, dmod,
PESTO, Copasi, …). In an ideal case, there are experts/developers for
these toolboxes in the audience.
The
workshop is intended for researchers at the PhD/PostDoc
level. Everybody is invited.
It is NOT
intended to give general introductions (like in summer/winter schools) for
people who are new in this field. Instead, the focus is on advanced
methodological questions for researchers which already have some experience.
The preliminary program:
Registration and submission of contributions is closed.
The conference fee is
130€ and includes catering as well as bus transfer
to the social events.
Please register as early as possible. The
number of participants is limited
to 50.
If there are more requests for talks than time
slots, then the organizers will decide based on the topic and submission date
(early submission are preferred).
·
Registration
deadline for talks: June 30th,
2017.
·
Registration
deadline for “application issues”: July
31st, 2017.
Please
register as early as possible. An example for an application issue is shown here. The number of application
issues is limited to 10.
·
The
final registration deadline for participation and posters is July 31th, 2017.
The workshop takes
place at the Freiburg Institute for
Advanced Studies (FRIAS) Albertstraße 19
|
This image provides a link to google maps. |
Please book
accommodation by yourself.
The
workshop is supported by funding provided by the Freiburg Institute for
Advanced Studies (FRIAS).
The
scientific work behind this workshop is funded by the German Ministry of
Education and Research (BMBF) via e:Bio Grant No.
031L0080.
Major Organizer:
Center
for Biosystems Analysis (ZBSA) Office 1:
+49 761 203 97207 If there
are any issues, please contact me. 2nd
Organizer:
Institute of Physics Office
+49 761 203 5829 |
|
Workshop Lecture Hall in the FRIAS. |